首頁
生物工(gōng)具
格式轉換工(gōng)具

合并FASTA格式序列

EMBL格式轉換爲FASTA格式

EMBL特征抽取器

EMBL翻譯信息提取

DNA序列清理(lǐ)

蛋白(bái)序列清理(lǐ)

GenBank格式轉換成FASTA格式

GenBank文(wén)件特征提取器

GenBank翻譯信息提取

氨基酸單字母到(dào)三字母

DNA子串提取

蛋白(bái)序列子串提取

反向互補序列計(jì)算(suàn)

密碼子分離器

FASTA文(wén)件分割

氨基酸三字母到(dào)單字母

滑動窗口方式提取DNA子串

滑動窗口方式提取蛋白(bái)序列子串
序列分析工(gōng)具一

繪制密碼子譜

密碼子使用(yòng)頻率表計(jì)算(suàn)

CpG島分析

DNA分子量計(jì)算(suàn)

正則表達式查找DNA子串

DNA堿基統計(jì)

模糊方式獲取DNA子串

模糊方式獲取蛋白(bái)子串

DNA/蛋白(bái)序列相似度比較

根據已知(zhī)蛋白(bái)序列生成cDNA

酶切突變工(gōng)具

開(kāi)放(fàng)閱讀框查找

雙序列密碼子比對(duì)

雙序列DNA堿基比對(duì)

雙序列蛋白(bái)殘基比對(duì)
序列分析工(gōng)具二

PCR引物信息統計(jì)

PCR産物推測

蛋白(bái)親水(shuǐ)分析工(gōng)具

蛋白(bái)等電點計(jì)算(suàn)器

蛋白(bái)分子量計(jì)算(suàn)

正則表達式查找蛋白(bái)子串

蛋白(bái)序列氨基酸組成統計(jì)

DNA模拟酶切分析

常見酶切位點統計(jì)

蛋白(bái)序列到(dào)基因序列

基因序列到(dào)蛋白(bái)序列
序列圖形化分析工(gōng)具

顔色法标記DNA/蛋白(bái)保守區(qū)

顔色法标記蛋白(bái)殘基生化相似度

DNA帶數字分組格式化

蛋白(bái)序列帶數字分組格式化

模闆引物匹配圖

酶切位點标記圖

DNA翻譯圖譜
随機序列生成工(gōng)具

随機突變DNA

随機突變蛋白(bái)序列

随機生成cDNA

随機生成DNA

随機突變特定位置的DNA

随機生成蛋白(bái)質序列

随機突變蛋白(bái)序列的特定位置

DNA随機采樣

蛋白(bái)質随機采樣

打亂DNA

打亂蛋白(bái)序列
Miscellaneous

IUPAC編碼表

密碼子表

浏覽器兼容性要求

如何鏡像此程序

單機版使用(yòng)方法

關于序列操作(zuò)套件

緻謝(xiè)

文(wén)獻

EMBL Feature提取器

EMBL特征提取器(EMBL Feature Extractor)可以依照EMBL中Feature的定義信息，将DNA片段提取并拼接出FASTA格式。在需要從(cóng)基因組中去除内含子、獲取cDNA時(shí)，此工(gōng)具特别有用(yòng)。

粘貼一條或多條EMBL文(wén)件内容，長度限定在200000以内。

ID   AF177870   standard; DNA; INV; 3123 BP.
XX
AC   AF177870;
XX
SV   AF177870.1
XX
DT   02-NOV-1999 (Rel. 61, Created)
DT   17-AUG-2000 (Rel. 64, Last updated, Version 2)
XX
DE   Caenorhabditis sp. CB5161 putative PP2C protein phosphatase FEM-2 (fem-2)
DE   gene, complete cds.
XX
KW   .
XX
OS   Caenorhabditis sp. CB5161
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3123
RA   Stothard P.M., Hansen D., Pilgrim D.;
RT   "Isolation of PP2C sequences using degenerate-oligo PCR";
RL   Unpublished.
XX
RN   [2]
RP   1-3123
RA   Stothard P.M., Hansen D., Pilgrim D.;
RT   ;
RL   Submitted (17-AUG-1999) to the EMBL/GenBank/DDBJ databases.
RL   Biological Sciences, University of Alberta, Edmonton, AB T6G-2E9, Canada
XX
DR   SPTREMBL; Q9U6S2; Q9U6S2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3123
FT                   /db_xref="taxon:135651"
FT                   /organism="Caenorhabditis sp. CB5161"
FT                   /strain="CB5161"
FT   mRNA            join(<265..402,673..781,911..1007,1088..1215,1377..1573,
FT                   1866..2146,2306..2634,2683..>2855)
FT                   /gene="fem-2"
FT                   /product="putative FEM-2 protein phosphatase type 2C"
FT   CDS             join(265..402,673..781,911..1007,1088..1215,1377..1573,
FT                   1866..2146,2306..2634,2683..2855)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9U6S2"
FT                   /note="possible sex-determining protein"
FT                   /gene="fem-2"
FT                   /product="putative PP2C protein phosphatase FEM-2"
FT                   /protein_id="AAF04557.1"
FT                   /translation="MSDSLNHPSSSTVHADDGFEPPTSPEDNNKKPSLEQIKQEREALF
FT                   TDLFADRRRSARSVIEEAFQNELMSAEPVQPNVPNPHSIPIRFRHQPVAGPAHDVFGDA
FT                   VHSIFQKIMSRGVNADYSHWMSYWIALGIDKKTQMNYHMKPFCKDTYATEGSLEAKQTF
FT                   TDKIRSAVEEIIWKSAEYCDILSEKWTGIHVSADQLKGQRNKQEDRFVAYPNGQYMNRG
FT                   QSDISLLAVFDGHGGHECSQYAAAHFWEAWSDAQHHHSQDMKLDELLEKALETLDERMT
FT                   VRSVRESWKGGTTAVCCAVDLNTNQIAFAWLGDSPGYIMSNLEFRKFTTEHSPSDPEEC
FT                   RRVEEVGGQIFVIGGELRVNGVLNLTRALGDVPGRPMISNKPDTLLKTIEPADYLVLLA
FT                   CDGISDVFNTSDLYNLVQAFVNEYDVEDYHELARYICNQAVSAGSADNVTVVIGFLRPP
FT                   EDVWRVMKTDSDDEESELEEEDDNE"
XX
SQ   Sequence 3123 BP; 986 A; 605 C; 597 G; 935 T; 0 other;
     gaacgcgaat gcctctctct ctttcgatgg gtatgccaat tgtccacatt cactcgtgtt        60
     gcctcctctt tgccaacacg caagacacca gaaacgcgtc aaccaaagag aaaaagacgc       120
     cgacaacggg cagcactcgc gagagacaaa ggttatcgcg ttgtgttatt atacattcgc       180
     atccgggtca actttagtcc gttgaacatg cttcttgaaa acctagttct cttaaaataa       240
     cgttttagaa gttttggtct tcagatgtct gattcgctaa atcatccatc gagttctacg       300
     gtgcatgcag atgatggatt cgagccacca acatctccgg aagacaacaa caaaaaaccg       360
     tctttagaac aaattaaaca ggaaagagaa gcgttgttta cggttagtta cctattagct       420
     gcaagttttg aaaaagcgga atctgtaaaa agcggaatct gtaaaaaaaa catctaagga       480
     ataattctga aaagaaaaag tttctaaatg ttaatcggaa tccaattttt atgaaattat       540
     ttaaaaaaaa actaaaatta gtttctaaaa aatttttcta aagtaattgg accatgtgaa       600
     ggtacaccca cttgttccaa tatgccatat ctaactgtaa aataatttga ttctcatgag       660
     aatatttttc aggatctatt cgcagatcgt cgacgaagcg ctcgttctgt gattgaagaa       720
     gctttccaaa acgaactcat gagtgctgaa ccagtccagc caaacgtgcc gaatccacat       780
     tgtgagttgg aaatttttat ttgataacca agagaaaaaa agttctacct ttttttcaaa       840
     aacctttcca aaaatgattc catctgatat aggattaaga aaaatatttt ccgaaatctc       900
     tgcttttcag cgattcccat tcgtttccgt catcaaccag ttgctggacc tgctcatgat       960
     gttttcggag acgcggtgca ttcaattttt caaaaaataa tgtccaggta tacactattt      1020
     ttgcatattt ttcttgccaa atttggtcaa aaaccgtagt acaacccaaa aagtttcttc      1080
     atttcagagg agtgaacgcg gattatagtc attggatgtc atattggatc gcgttgggaa      1140
     tcgacaaaaa aacacaaatg aactatcata tgaaaccgtt ttgcaaagat acttatgcaa      1200
     ctgaaggctc cttaggtagg ttagtctttt ctaggcacag aagagtgaga aaattctaaa      1260
     tttctgagca gtctgctttt tgttttcctt gagtttttac ttaaagctct taaaagaaat      1320
     ctaggcgtga agttcgagcc ttgtaccata ccacaacagc attccaaatg ttacagaagc      1380
     gaaacaaaca tttactgata aaatcaggtc agctgttgag gaaattatct ggaagtccgc      1440
     tgaatattgt gatattctta gcgagaagtg gacaggaatt catgtgtcgg ccgaccaact      1500
     gaaaggtcaa agaaataagc aagaagatcg ttttgtggct tatccaaatg gacaatacat      1560
     gaatcgtgga caggttagtg cgaatcgggg actcaagatt tactgaaata gtgaagagaa      1620
     aacaaaagaa aactatattt tcaaaaaaaa tgagaactct aataaacaga atgaaaaaca      1680
     ttcaaagcta cagtagtatt tccagctgga gtttccagag ccaaaaaaat gcgagtatta      1740
     ctgtagtttt gaaattggtt tctcacttta cgtacgattt tttgattttt ttttcagact      1800
     cttcatatga aaaaaaatca tgttttctcc tttacaagat ttttttgatc tcaaaacatt      1860
     tccagagtga catttcactt cttgcggtgt tcgatgggca tggcggacac gagtgctctc      1920
     aatatgcagc tgctcatttc tgggaagcat ggtccgatgc tcaacatcat cattcacaag      1980
     atatgaaact tgacgaactc ctagaaaagg ctctagaaac attggacgaa agaatgacag      2040
     tcagaagtgt tcgagaatct tggaaaggtg gaaccactgc tgtctgctgt gctgttgatt      2100
     tgaacactaa tcaaatcgca tttgcctggc ttggagattc accagggtaa tcaatttttt      2160
     tttagttttt ggaactttac gtcccgaaaa attattcctt tatcacctaa ttcctacagt      2220
     aacccaagct ccgaattaaa taaagttaaa gcgtggtata cacataaaaa taagaaaaaa      2280
     ttgttcatga aatccatttt tccagttaca tcatgtcaaa cttggagttc cgcaaattca      2340
     ctactgaaca ctccccgtct gacccggagg aatgtcgacg agtcgaagaa gtcggtggcc      2400
     agatttttgt gatcggtggt gagctccgtg tgaatggagt actcaacctg acgcgagcac      2460
     taggagacgt acctggaaga ccaatgatat ccaacaaacc tgatacctta ctgaagacga      2520
     tcgaacctgc ggattatctt gttttgttgg cctgtgacgg gatttctgac gtcttcaaca      2580
     ctagtgattt gtacaatttg gttcaggctt ttgtcaatga atatgacgta gaaggtatca      2640
     aactgatcgt ttttcacatc acaaaattct tgaattttcc agattatcac gaacttgcac      2700
     gctacatttg caatcaagca gtttcagctg gaagtgctga caatgtgaca gtagttatag      2760
     gtttcctccg tccaccagaa gacgtttggc gtgtaatgaa aacagactcg gatgatgaag      2820
     agagcgagct cgaggaagaa gatgacaatg aatagtttat tgcaagtttt ccaaaacttt      2880
     tccaatttcc ctgggtattg attagcatcc atatcttacg gcgattatat caattgtaac      2940
     attatttctg tttctccccc cacctctcaa attttcaaat gacccttttt cttttcgtct      3000
     acctgtatcg ttttccattc atctcccccc ctccactgtg gtatatcatt ttgtcattag      3060
     aaagtattat tttgattttc attggcagta gaagacaaca ggatacagaa gaggttttca      3120
     cag                                                                    3123
//

* Feature序列輸出時(shí)需要

* 此工(gōng)具需要浏覽器支持JavaScript. 詳情請(qǐng)見浏覽器兼容性介紹.

* 您可以鏡像此工(gōng)具到(dào)自(zì)己的網站(zhàn) or也(yě)可以單機使用(yòng)